omnipy.components.isa.models.investigation_schema

CLASS	DESCRIPTION
FieldType
IsaInvestigationModel
IsaInvestigationSchema

FieldType

Bases: Enum

ATTRIBUTE	DESCRIPTION
Investigation

Source code in src/omnipy/components/isa/models/investigation_schema.py

class FieldType(Enum):
    Investigation = 'Investigation'

Investigation class-attribute instance-attribute

Investigation = 'Investigation'

IsaInvestigationModel

Bases: Model[IsaInvestigationSchema]

Source code in src/omnipy/components/isa/models/investigation_schema.py

class IsaInvestigationModel(Model[IsaInvestigationSchema]):
    ...

IsaInvestigationSchema

Bases: pyd.BaseModel

CLASS	DESCRIPTION
Config

ATTRIBUTE	DESCRIPTION
comments	TYPE: Optional[List[comment_schema.IsaCommentModel]]
description	TYPE: Optional[str]
field_context	TYPE: Optional[str]
field_id	TYPE: Optional[str]
field_type	TYPE: Optional[FieldType]
filename	TYPE: Optional[str]
identifier	TYPE: Optional[str]
ontologySourceReferences	TYPE: Optional[List[ontology_source_reference_schema.IsaOntologySourceReferenceModel]]
people	TYPE: Optional[List[person_schema.IsaPersonModel]]
publicReleaseDate	TYPE: Optional[Union[datetime, date, pyd.constr(max_length=0)]]
publications	TYPE: Optional[List[publication_schema.IsaPublicationModel]]
studies	TYPE: Optional[List[study_schema.IsaStudyModel]]
submissionDate	TYPE: Optional[Union[datetime, date, pyd.constr(max_length=0)]]
title	TYPE: Optional[str]

Source code in src/omnipy/components/isa/models/investigation_schema.py

class IsaInvestigationSchema(pyd.BaseModel):
    class Config:
        extra = pyd.Extra.forbid
        use_enum_values = True

    field_id: Optional[str] = pyd.Field(None, alias='@id')
    field_context: Optional[str] = pyd.Field(None, alias='@context')
    field_type: Optional[FieldType] = pyd.Field(None, alias='@type')
    filename: Optional[str] = None
    identifier: Optional[str] = None
    title: Optional[str] = None
    description: Optional[str] = None
    submissionDate: Optional[Union[datetime, date, pyd.constr(max_length=0)]] = None
    publicReleaseDate: Optional[Union[datetime, date, pyd.constr(max_length=0)]] = None
    ontologySourceReferences: Optional[List[
        ontology_source_reference_schema.IsaOntologySourceReferenceModel]] = None
    publications: Optional[List[publication_schema.IsaPublicationModel]] = None
    people: Optional[List[person_schema.IsaPersonModel]] = None
    studies: Optional[List[study_schema.IsaStudyModel]] = None
    comments: Optional[List[comment_schema.IsaCommentModel]] = None

    _date_to_iso_format = pyd.validator(
        'submissionDate', 'publicReleaseDate', allow_reuse=True)(
            date_to_iso_format)

comments class-attribute instance-attribute

comments: Optional[List[comment_schema.IsaCommentModel]] = None

description class-attribute instance-attribute

description: Optional[str] = None

field_context class-attribute instance-attribute

field_context: Optional[str] = pyd.Field(None, alias='@context')

field_id class-attribute instance-attribute

field_id: Optional[str] = pyd.Field(None, alias='@id')

field_type class-attribute instance-attribute

field_type: Optional[FieldType] = pyd.Field(None, alias='@type')

filename class-attribute instance-attribute

filename: Optional[str] = None

identifier class-attribute instance-attribute

identifier: Optional[str] = None

ontologySourceReferences class-attribute instance-attribute

ontologySourceReferences: Optional[
    List[ontology_source_reference_schema.IsaOntologySourceReferenceModel]
] = None

people class-attribute instance-attribute

people: Optional[List[person_schema.IsaPersonModel]] = None

publicReleaseDate class-attribute instance-attribute

publicReleaseDate: Optional[Union[datetime, date, pyd.constr(max_length=0)]] = None

publications class-attribute instance-attribute

publications: Optional[List[publication_schema.IsaPublicationModel]] = None

studies class-attribute instance-attribute

studies: Optional[List[study_schema.IsaStudyModel]] = None

submissionDate class-attribute instance-attribute

submissionDate: Optional[Union[datetime, date, pyd.constr(max_length=0)]] = None

title class-attribute instance-attribute

title: Optional[str] = None

Config

ATTRIBUTE	DESCRIPTION
extra
use_enum_values

Source code in src/omnipy/components/isa/models/investigation_schema.py

class Config:
    extra = pyd.Extra.forbid
    use_enum_values = True

extra class-attribute instance-attribute

extra = pyd.Extra.forbid

use_enum_values class-attribute instance-attribute

use_enum_values = True